On Saturday, the death toll stood at 45 in the region, home to some of the poorest countries in the Americas. El Salvador was the worst affected overnight, with accidents pushing up the total number of victims there to 27.
"The majority of these people were killed by mudslides in their homes," local emergency services official Jorge Melendez told reporters at a news conference.
Guatemala also reported more dead, bringing its death toll to 28, while the total rose to 12 in Honduras. At least seven people have also died in Nicaragua. No deaths were reported in Costa Rica, though dozens of families have been evacuated.
Rain was still falling in parts of the region. The weather has also hit southeastern Mexico, where swollen rivers have affected thousands of people, notably in Tabasco state.
At least four people died in Mexico earlier in the week when Category Two Hurricane Jova struck from the Pacific, forcing the country's busiest port to close.